Search results for "Intercalating Agents"

showing 10 items of 28 documents

New insights into the mechanism of action of pyrazolo[1,2-a]benzo[1,2,3,4]tetrazin-3-one derivatives endowed with anticancer potential

2018

Due to the scarce biological profile, the pyrazolo[1,2-a]benzo[1,2,3,4]tetrazine-3-one scaffold (PBT) has been recently explored as promising core for potential anticancer candidates. Several suitably decorated derivatives (PBTs) exhibited antiproliferative activity in the low-micromolar range associated with apoptosis induction and cell cycle arrest on S phase. Herein, we selected the most active derivatives and submitted them to further biological explorations to deepen the mechanism of action. At first, a DNA targeting is approached by means of flow Linear Dichroism experiments so as to evaluate how small planar molecules might interact with DNA, including the interference with the catal…

0301 basic medicineCell cycle checkpointPyrazolo[1TetrazolesBiochemistrychemistry.chemical_compound0302 clinical medicineSalmonAntiproliferative; DNA-interacting; Intercalation; Linear dichroism; Molecular docking; Pyrazolo[12-a]benzo[1234]tetrazin-3-one; Topoisomerase II; Biochemistry; Molecular MedicineDrug DiscoveryDNA-interactingBase PairingADMEbiologyIntercalating AgentsMolecular Docking Simulation030220 oncology & carcinogenesisMolecular Medicinemedicine.symptomtopoisomerase II3StereochemistryIn silico2Antineoplastic Agentslinear dichroism03 medical and health sciencesantiproliferativeintercalationmedicineAnimalsHumansDNA Cleavage2-a]benzo[1Pharmacology4]tetrazin-3-oneBinding SitesTopoisomeraseOrganic ChemistryDNAmolecular dockingSettore CHIM/08 - Chimica FarmaceuticaChemical spaceProtein Structure TertiaryDNA Topoisomerases Type II030104 developmental biologyMechanism of actionchemistryCatalytic cyclebiology.proteinpyrazolo[12-a]benzo[1234]tetrazin-3-oneDNAChemical Biology & Drug Design
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1-ethyl-3-(6-methylphenanthridine-8-il) urea modulates TLR3/9 activation and induces selective pro-inflammatory cytokine expression in vitro.

2017

We have previously demonstrated the nucleic acid binding capacity of phenanthridine derivatives (PHTs). Because nucleic acids are potent inducers of innate immune response through Toll-like receptors (TLRs), and because PTHs bear a structural resemblance to commonly used synthetic ligands for TLR7/8, we hypothesized that PHTs could modulate/activate immune response. We found that compound M199 induces secretion of IL-6, IL-8 and TNFα in human PBMCs and inhibits TLR3/9 activation in different cellular systems (PBMCs, HEK293 and THP-1 cell lines).

0301 basic medicineClinical BiochemistryPharmaceutical ScienceDown-RegulationBiochemistryCell Line03 medical and health sciences0302 clinical medicineImmune systemDrug DiscoveryHumansImmunologic FactorsUreaSecretionReceptorMolecular BiologyInnate immune systemChemistryInterleukin-6Tumor Necrosis Factor-alphaOrganic ChemistryInterleukin-8Interferon-alphaTLR7Molecular biologyphenantridines ; TLR ; PBMCs ; cytokines ; immunomodulationIntercalating AgentsPhenanthridinesToll-Like Receptor 3030104 developmental biologyOligodeoxyribonucleotidesToll-Like Receptor 9TLR3Nucleic acidMolecular MedicineTumor necrosis factor alpha030215 immunologySignal TransductionBioorganicmedicinal chemistry letters
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Pyrazolo[3,4-d][1,2,3]triazolo[1,5-a]pyrimidine: a new ring system through Dimroth rearrangement

2008

Abstract Derivatives of the new ring system pyrazolo[3,4- d ][1,2,3]triazolo[1,5- a ]pyrimidine were synthesized from the corresponding angular isomers, through a Dimroth rearrangement, in quantitative yields. Preliminary computational studies demonstrated that this class of compounds could be a good candidate as DNA intercalating agents.

13-dipolar cycloaddition Dimroth rearrangement docking studies DNA intercalating agentsPyrimidineChemistryStereochemistryOrganic ChemistryIntercalation (chemistry)Settore CHIM/06 - Chimica OrganicaRing (chemistry)BiochemistryDimroth rearrangementSettore CHIM/08 - Chimica FarmaceuticaD-1chemistry.chemical_compoundDrug DiscoveryDNA
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Probing DNA conductivity with photoinduced electron transfer and scanning tunneling microscopy.

2012

Abstract The possibility that the stacked DNA bases can mediate vectorial electron transfer has been examined using two different approaches. Experiments on photoinduced electron transfer with intercalated donors and acceptors (either randomly bound or linked dyads of ruthenium complex and viologen) indicate that while DNA may be a better medium than acetonitrile for electron transfer over short distances (2-3-base pair, equivalent to 10-14Å centre-to-centre separation), it is a poor medium for transport over larger separations. Attempts to measure conductivity of individual DNA molecules using scanning tunneling microscopy to image mixed monolayers of mercaptohexanol (MCH) and 30-mer or 10…

ChemistryViologenElectronsGeneral MedicineDNAPhotochemistryElectron transport chainPhotoinduced electron transferIntercalating Agentslaw.inventionElectron TransportElectron transferStructural BiologylawMicroscopy Scanning TunnelingMonolayerMicroscopymedicineNative stateScanning tunneling microscopeMolecular BiologyOxidation-Reductionmedicine.drugJournal of biomolecular structuredynamics
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(Dipyrido[3,2-a:2',3'-c]phenazine)(glycinato)copper(II) perchlorate: a novel DNA-intercalator with anti-proliferative activity against thyroid cancer…

2012

Abstract A novel copper(II) heteroleptic complex of dipyrido[3,2-a:2′,3′-c]phenazine (dppz) and glycinato (gly) as chelating ancillary ligand, [Cu(dppz)(gly)]ClO 4 ( 1 ), was synthesized and characterized. X-ray crystallography revealed that the coordination geometry of the cationic [Cu(dppz)(gly)] + unit is hexacoordinated and shows a distorted octahedral coordination geometry in the solid state, with the N,N and N,O chelating atoms of dppz and glycinato, respectively, in the square plane and in which the planar units are connected in a monodimensional polymeric array by the apical copper coordination of the second carboxylic oxygen atom. Biological assays showed that 1 exhibits a remarkab…

Circular dichroismCopper(II) perchlorateStereochemistryIntercalation (chemistry)Phenazinechemistry.chemical_elementAntineoplastic AgentsLigandsBiochemistryInorganic Chemistrychemistry.chemical_compoundCoordination ComplexesCell Line TumorHumansChelationThyroid NeoplasmsDNA CleavageCoordination geometryLigandDNACopper DNA dppz Glycine Intercalation Thyroid cancerCopperIntercalating AgentschemistrySettore CHIM/03 - Chimica Generale E Inorganicaxray cristallogrphyPhenazinesJournal of inorganic biochemistry
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Metal NHC Complexes with Naphthalimide Ligands as DNA-Interacting Antiproliferative Agents

2017

Naphthalimide-based N-heterocyclic carbene (NHC) complexes of the type [(1,5-cyclooctadiene)(NHC)RhCl)] (4 a-c), [(p-cymene)(NHC)RuCl2 )] (5 a-c), and [(NHC)CuBr] (6 a-c) were synthesized and investigated as antiproliferative agents that target DNA. The cytotoxic effects were largely driven by the naphthalimide structure, which is a DNA-intercalating moiety. Regarding the metal center, the highest activities were observed with the rhodium complexes, and cytotoxic activity was significantly lower for the ruthenium derivatives. The stable coordination of the NHC ligands of selected complexes 4 b and 5 b in solution was confirmed, and their DNA binding properties were studied by UV/Vis spectro…

Circular dichroismStereochemistryIntercalation (chemistry)Molecular Conformationchemistry.chemical_elementApoptosisCrystallography X-RayLigands010402 general chemistry01 natural sciencesBiochemistryRhodiumMetalchemistry.chemical_compoundDrug StabilityCoordination ComplexesDrug DiscoveryHumansMoietyGeneral Pharmacology Toxicology and PharmaceuticsrutheniumCell ProliferationPharmacology010405 organic chemistryChemistryCircular DichroismOrganic ChemistryDNAnaphthalimideIntercalating Agentsanticancer agent0104 chemical sciencesRutheniumcarbeneNaphthalimidesSettore CHIM/03 - Chimica Generale E Inorganicacoppervisual_artrhodiumMCF-7 CellsMonoterpenesvisual_art.visual_art_mediumCymenesMolecular MedicineSpectrophotometry UltravioletHT29 CellsMethaneCarbeneDNAChemMedChem
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Nickel(II), copper(II) and zinc(II) metallo-intercalators: structural details of the DNA-binding by a combined experimental and computational investi…

2014

We present a thorough characterization of the interaction of novel nickel(II) (1), copper(II) (2) and zinc(II) (3) Schiff base complexes with native calf thymus DNA (ct-DNA), in buffered aqueous solution at pH 7.5. UV-vis absorption, circular dichroism (CD) and viscometry titrations provided clear evidence of the intercalative mechanism of the three square-planar metal complexes, allowing us to determine the intrinsic DNA-binding constants (K(b)), equal to 1.3 × 10(7), 2.9 × 10(6), and 6.2 × 10(5) M(-1) for 1, 2 and 3, respectively. Preferential affinity, of one order of magnitude, toward AT compared to GC base pair sequences was detected by UV-vis absorption titrations of 1 with [poly(dG-d…

Circular dichroismXASIntercalation (chemistry)Inorganic chemistryMolecular Dynamics SimulationInorganic ChemistryMetalbioinorganic chemistrychemistry.chemical_compoundsymbols.namesakeCoordination ComplexesNickelSchiff BasesX-ray absorption spectroscopySchiff baseAqueous solutionExtended X-ray absorption fine structureCircular DichroismDNAcomputational chemistrySettore CHIM/08 - Chimica FarmaceuticaIntercalating AgentsGibbs free energyZincCrystallographyX-Ray Absorption SpectroscopychemistrySettore CHIM/03 - Chimica Generale E Inorganicavisual_artsymbolsvisual_art.visual_art_mediumSpectrophotometry UltravioletCopper
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Organoplatinum(II) Complexes Self-Assemble and Recognize AT-Rich Duplex DNA Sequences

2021

The specific recognition of AT-rich DNA sequences opens up the door to promising diagnostic and/or therapeutic strategies against gene-related diseases. Here, we demonstrate that amphiphilic PtII complexes of the type [Pt(dmba)(N∧N)]NO3 (dmba = N,N-dimethylbenzylamine-κN, κC; N∧N = dpq (3), dppz (4), and dppn (5)) recognize AT-rich oligonucleotides over other types of DNA, RNA, and model proteins. The crystal structure of 4 shows the presence of significant π-stacking interactions and a distorted coordination sphere of the d8 PtII atom. Complex 5, containing the largest π-conjugated ligand, forms supramolecular assemblies at high concentrations under aqueous environment. However, its aggreg…

Coordination sphereOrganoplatinum CompoundsStereochemistrySupramolecular chemistryDMBAElectrophoretic Mobility Shift Assay010402 general chemistryCrystallography X-RayLigands01 natural sciencesArticleInorganic Chemistrychemistry.chemical_compoundCoordination ComplexesHumansPhysical and Theoretical ChemistryDNA • light-switch • platinum • pseudo-tetrahedral • antitumor agent • DFTOrganoplatinumGel electrophoresisMolecular Structure010405 organic chemistryChemistryOligonucleotideLigandSpectrum AnalysisStereoisomerismDNAIntercalating Agents0104 chemical sciencesA549 CellsSettore CHIM/03 - Chimica Generale E InorganicaDNA
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TWJ-Screen: an isothermal screening assay to assess ligand/DNA junction interactions in vitro

2017

International audience; The quest for chemicals able to operate at selected genomic loci in a spatiotemporally controlled manner is desirable to create manageable DNA damages. Mounting evidence now shows that alternative DNA structures, including G-quadruplexes and branched DNA (or DNA junctions), might hamper proper progression of replication fork, thus triggering DNA damages and genomic instability. Therefore, small molecules that stabilize these DNA structures are currently scrutinized as a promising way to create genomic defects that cannot be dealt with properly by cancer cells. While much emphasis has been recently given to G-quadruplexes and related ligands, we report herein on three…

DNA ReplicationLigands[SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biology[ CHIM ] Chemical SciencesGenomic InstabilitySmall Molecule LibrariesStructure-Activity Relationship[ SDV.MHEP ] Life Sciences [q-bio]/Human health and pathology[SDV.BBM] Life Sciences [q-bio]/Biochemistry Molecular BiologyHumans[CHIM]Chemical Sciences[SDV.BBM]Life Sciences [q-bio]/Biochemistry Molecular BiologyFluorescent DyesDNA CruciformBase SequenceGenome HumanRhodamines[CHIM.ORGA]Chemical Sciences/Organic chemistry[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry Molecular Biology/Molecular biology[CHIM.ORGA] Chemical Sciences/Organic chemistryIntercalating AgentsHigh-Throughput Screening AssaysG-QuadruplexesGenetic LociMethods Online[SDV.MHEP]Life Sciences [q-bio]/Human health and pathologyDNA Damage
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Metal ions modify DNA-protecting and mutagen-scavenging capacities of the AV-153 1,4-dihydropyridine.

2019

Abstract 1,4-Dihydropyridines (1,4-DHP) possess important biochemical and pharmacological properties, including antioxidant and antimutagenic activities. AV-153-Na, an antimutagenic and DNA-repair enhancing compound was shown to interact with DNA by intercalation. Here we studied DNA binding of several AV-153 salts to evaluate the impact of AV-153 modifications on its DNA binding capacity, the ability to scavenge the peroxynitrite, to protect HeLa and B-cells cells against DNA damage. Affinity of the AV-153 salts to DNA measured by a fluorescence assay was dependent on the metal ion forming a salt in position 4 of the 1,4-DHP, and it decreased as follows: Mg > Na > Ca > Li > Rb > K. AV-153-…

DihydropyridinesAntioxidantDNA RepairDNA damageHealth Toxicology and Mutagenesismedicine.medical_treatmentMetal ions in aqueous solutionIntercalation (chemistry)[SDV.CAN]Life Sciences [q-bio]/CancerMutagen02 engineering and technologymedicine.disease_causeNiacinAntioxidantsHeLa03 medical and health scienceschemistry.chemical_compoundPeroxynitrous AcidGeneticsmedicineHumansDrug InteractionsDNA Breaks Single-StrandedComputingMilieux_MISCELLANEOUS030304 developmental biology0303 health sciencesB-Lymphocytesbiology021001 nanoscience & nanotechnologybiology.organism_classificationIntercalating AgentsRecombinant ProteinsOxidative StresschemistryMetalsBiophysicstat Gene Products Human Immunodeficiency VirusComet AssaySingle-Cell Analysis0210 nano-technologyDNAPeroxynitriteDNA DamageHeLa CellsMutation research. Genetic toxicology and environmental mutagenesis
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